Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs78230986 chr4:70060992 A/C 5.73E-13 118 39.75 49.6 6 KM Plot
THYM rs78249104 chr11:20027680 G/T 2.56E-6 119 42.25 32.7 13.75 KM Plot
THYM rs7825993 chr8:55460789 A/C 0 118 4.13 27.07 49.4 KM Plot
THYM rs7827931 chr8:39939381 C/T 9.89E-5 118 40.67 48.13 28.43 KM Plot
THYM rs7829020 chr8:39934707 T/A 9.89E-5 118 40.67 48.13 28.43 KM Plot
THYM rs7829771 chr8:39935236 T/C 9.89E-5 118 40.67 48.13 28.43 KM Plot
THYM rs78346641 chr4:70279363 T/C 4.8E-13 119 41.22 42.3 6 KM Plot
THYM rs78423143 chr15:93976057 G/A 4.24E-13 117 40.67 50.07 6 KM Plot
THYM rs78436382 chr2:30686488 C/T 1.5E-8 118 38.33 50.07 33.13 KM Plot
THYM rs78438662 chr4:70047303 C/A 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs7846572 chr8:62632989 C/T 4.48E-9 119 45.87 35.13 12.63 KM Plot
THYM rs78494545 chr13:106581996 T/C 8.63E-5 117 38.23 56.8 28.43 KM Plot
THYM rs78503001 chr4:70233054 C/T 6.15E-13 118 41.77 42.3 6 KM Plot
THYM rs78524383 chr12:53228094 G/A 0 117 38.83 96.37 2.9 KM Plot
THYM rs7853659 chr9:98517074 A/G 1.16E-8 117 46.6 41.7 30.35 KM Plot